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| Status |
Public on Jan 14, 2016 |
| Title |
DELAY OF GERMINATION 1 plays a role in Arabidopsis seed maturation |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
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| Summary |
We analysed the transcriptome of dry seeds (the end product of seed maturation) of three genotypes with different DOG1 expression levels. These included the WT Ler (low DOG1 expression), the near isogenic line NILDOG1-Cvi (strong DOG1 expression) and the non-dormant dog1-1 mutant (absence of DOG1 expression). NILDOG1-Cvi is the Ler WT containing an introgression of the Cvi accession on chromosome 5, which includes the DOG1 gene (Bentsink et al., 2006). The dog1-1 mutant is in the NILDOG1-Cvi genetic background.
The aim was to obtain a global overview of the effect of different levels of DOG1 expression during seed maturation on the dry seed transcriptome.
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| Overall design |
Gene expression in dry seeds of three genotypes was compared: Ler, NILDOG1 and the dog1-1 mutant. For each genotype, three replicates were used.
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| Contributor(s) |
Dekkers BJ, He H, Hanson J, Willems L, Cueff G, Rajjou L, Hilhorst HW, Bentsink L |
| Citation(s) |
26729600 |
| Submission date |
Jan 30, 2015 |
| Last update date |
Jun 12, 2017 |
| Contact name |
Leónie Bentsink |
| E-mail(s) |
leonie.bentsink@wur.nl
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| Phone |
+31317481325
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| Organization name |
Wageningen University
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| Street address |
Droevendaalsesteeg 1
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| City |
Wageningen |
| ZIP/Postal code |
6708 PB |
| Country |
Netherlands |
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| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA274129 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE65471_RAW.tar |
16.9 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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