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Status |
Public on Apr 05, 2013 |
Title |
Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis |
Organism |
Solanum lycopersicum |
Experiment type |
Non-coding RNA profiling by high throughput sequencing
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Summary |
By using parallel analysis of RNA ends (PARE) for global identification of miRNA targets and comparing four different stages of tomato fruit development we identified a large number of target genes of miRNAs.
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Overall design |
PARE libraries were produced, one each, for tomato fruits at 5 days after pollination, mature green fruit, Breaker fruit, and 7 days after Breaker stge fruits
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Contributor(s) |
de Maagd RA, Karlova R, van Haarst JC |
Citation(s) |
23487304 |
Submission date |
Nov 30, 2012 |
Last update date |
May 15, 2019 |
Contact name |
Ruud A de Maagd |
E-mail(s) |
ruud.demaagd@wur.nl
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Organization name |
Plant Resarch International
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Street address |
PO Box 619
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City |
Wageningen |
ZIP/Postal code |
NL-6700AP |
Country |
Netherlands |
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Platforms (1) |
GPL16345 |
Illumina HiSeq 2000 (Solanum lycopersicum) |
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Samples (4)
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This SubSeries is part of SuperSeries: |
GSE42784 |
Comparison of tomato fruit gene expression data obtained by microarray analysis and by treatment of degradome sequencing data as an RNAseq experiment |
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Relations |
BioProject |
PRJNA182523 |
SRA |
SRP017377 |