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Series GSE42661 Query DataSets for GSE42661
Status Public on Apr 05, 2013
Title Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis
Organism Solanum lycopersicum
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary By using parallel analysis of RNA ends (PARE) for global identification of miRNA targets and comparing four different stages of tomato fruit development we identified a large number of target genes of miRNAs.
 
Overall design PARE libraries were produced, one each, for tomato fruits at 5 days after pollination, mature green fruit, Breaker fruit, and 7 days after Breaker stge fruits
 
Contributor(s) de Maagd RA, Karlova R, van Haarst JC
Citation(s) 23487304
Submission date Nov 30, 2012
Last update date May 15, 2019
Contact name Ruud A de Maagd
E-mail(s) ruud.demaagd@wur.nl
Organization name Plant Resarch International
Street address PO Box 619
City Wageningen
ZIP/Postal code NL-6700AP
Country Netherlands
 
Platforms (1)
GPL16345 Illumina HiSeq 2000 (Solanum lycopersicum)
Samples (4)
GSM1047560 AC 5DAP
GSM1047561 AC MG
GSM1047562 AC Br
This SubSeries is part of SuperSeries:
GSE42784 Comparison of tomato fruit gene expression data obtained by microarray analysis and by treatment of degradome sequencing data as an RNAseq experiment
Relations
BioProject PRJNA182523
SRA SRP017377

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE42661_cDNAp10.txt.gz 206.6 Kb (ftp)(http) TXT
GSE42661_cDNAp11.txt.gz 198.6 Kb (ftp)(http) TXT
GSE42661_cDNAp9.txt.gz 199.0 Kb (ftp)(http) TXT
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Processed data are available on Series record
Raw data are available in SRA

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